ENCFF000KHC

Library Details

Organism: Homo Sapiens
Biosample: SK-N-SH (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSJ
Description: Part of ENCODE experiment ENCSR000CSJ. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, SK-N-SH. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 7.00 5.00 2.35 100.0 RNU5A-1-201 snRNA SK-N-SH (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 12.84 9.17 4.31 36.67 RNU5A-1-201 snRNA SK-N-SH (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 15.71 11.22 5.27 44.88 RNU5A-1-201 snRNA SK-N-SH (Cell line)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 116.00 31.10 38.93 100.0 SNORD12B-201 snoRNA SK-N-SH (Cell line)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 217.00 58.18 72.82 100.0 SNORD12B-201 snoRNA SK-N-SH (Cell line)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8808.00 95.07 2955.90 100.0 SNHG3-202 retained intron SK-N-SH (Cell line)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 934.00 66.34 313.44 100.0 SNORD124-201 snoRNA SK-N-SH (Cell line)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 48.00 43.24 16.11 61.54 RPL3-212 retained intron SK-N-SH (Cell line)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 30.00 0.22 10.07 100.0 RPL13A-212 retained intron SK-N-SH (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12434.00 90.83 4172.75 100.0 RPL13A-212 retained intron SK-N-SH (Cell line)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 6923.00 47.36 2323.31 100.0 RPL7A-207 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 5995.00 41.01 2011.88 100.0 RPL7A-207 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1572.00 54.23 527.55 100.0 RABGGTB-213 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 314.00 10.83 105.38 100.0 RABGGTB-213 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 1.00 0.03 0.34 100.0 RABGGTB-213 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 7481.00 97.60 2510.57 99.99 RPL5-205 retained intron SK-N-SH (Cell line)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 16603.00 82.32 5571.84 100.0 RACK1-230 retained intron SK-N-SH (Cell line)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 41.00 7.81 13.76 100.0 SNHG6-204 retained intron SK-N-SH (Cell line)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 408.00 77.71 136.92 100.0 SNHG6-204 retained intron SK-N-SH (Cell line)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 7.00 6.67 2.35 16.67 HSPA8-211 retained intron SK-N-SH (Cell line)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 6508.00 85.99 2184.03 100.0 RPS13-208 retained intron SK-N-SH (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 486.00 92.93 163.10 100.0 HSPA8-215 retained intron SK-N-SH (Cell line)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 106.00 66.67 35.57 100.0 RPL4-214 retained intron SK-N-SH (Cell line)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 41.00 7.44 13.76 100.0 ENST00000570843 lncRNA SK-N-SH (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 230.00 41.74 77.19 100.0 ENST00000570843 lncRNA SK-N-SH (Cell line)