ENCFF000KFJ

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 194978.00 98.31 12702.13 99.36 RPL5-205 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 42.00 0.02 2.74 100.0 RPL5-205 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 106.00 4.29 6.91 100.0 RACK1-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1757.00 6.73 114.46 100.0 SNHG6-204 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 22254.00 85.19 1449.77 100.0 SNHG6-204 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 19.00 1.81 1.24 65.52 WDR74-204 protein coding skeletal muscle satellite cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 3348.00 52.57 218.11 63.0 HSPA8-211 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 796.00 78.04 51.86 100.0 RPS13-208 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 4065.00 82.81 264.82 100.0 HSPA8-215 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 526.00 57.55 34.27 100.0 RPL4-214 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 46.00 24.21 3.00 100.0 ENST00000570843 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 62.00 32.63 4.04 100.0 ENST00000570843 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 16.00 1.29 1.04 100.0 SNORD3C-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.27 0.12 38.06 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 3.46 0.49 0.23 69.19 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 334.00 47.04 21.76 100.0 C19orf48P-203 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 41.00 11.61 2.67 100.0 RPS11-206 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.25 0.07 100.0 ENST00000602478 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1310.00 54.81 85.34 100.0 NOP56-219 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 40.64 0.44 2.65 33.87 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.01 0.07 100.0 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4577.00 49.95 298.18 100.0 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 3.00 0.03 0.20 60.0 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 76.10 0.83 4.96 63.41 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 3.48 0.04 0.23 20.45 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)