ENCFF000KFJ

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 29.00 10.47 1.89 72.5 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 52.10 18.81 3.39 52.1 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 38.03 13.73 2.48 46.95 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 6.00 0.82 0.39 100.0 7SK.1-201 misc RNA skeletal muscle satellite cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 1.00 0.14 0.07 100.0 7SK.1-201 misc RNA skeletal muscle satellite cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 221.00 30.07 14.40 100.0 7SK.1-201 misc RNA skeletal muscle satellite cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 9.00 1.25 0.59 90.0 SNORD83A-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.14 0.07 100.0 SNORD83A-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 3.00 0.05 0.20 100.0 MT-RNR1-201 Mt rRNA skeletal muscle satellite cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 544.00 22.76 35.44 100.0 SNORD12B-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1280.00 53.56 83.39 100.0 SNORD12B-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 1.06 0.07 100.0 SNORD62B-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 3470.00 81.30 226.06 100.0 SNHG3-202 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2173.00 66.33 141.56 100.0 SNORD124-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 2.00 0.04 0.13 66.67 RPL3-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 4127.00 74.78 268.86 89.08 RPL3-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6.00 0.11 0.39 100.0 RPL3-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 1.00 0.68 0.07 100.0 RABGGTB-208 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 11671.00 72.06 760.32 100.0 RPL13A-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 2482.00 15.32 161.69 100.0 RPL13A-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7306.00 59.03 475.96 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 3393.00 27.42 221.04 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3946.00 47.07 257.07 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 920.00 10.97 59.93 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 4.00 0.05 0.26 80.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)