ENCFF000KFC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 18.63 0.15 0.91 77.63 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 41.00 8.60 2.01 100.0 SNHG14-224 lncRNA melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.05 50.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1204.00 0.24 59.07 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 158379.00 32.02 7770.28 94.61 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1489.00 0.30 73.05 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 190035.00 38.42 9323.37 72.28 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 3.00 0.03 0.15 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 6602.00 73.86 323.90 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 92090.00 9.91 4518.06 97.57 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 789611.00 84.96 38739.35 97.29 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 2685.00 0.29 131.73 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.05 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 2880.00 0.31 141.30 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 4.00 3.48 0.20 100.0 SNHG14-234 lncRNA melanocyte of skin (Primary cell)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 4.00 5.63 0.20 100.0 SNHG14-241 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 3617.00 18.25 177.45 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2687.00 13.56 131.83 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1.00 0.01 0.05 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 7599.00 38.35 372.82 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1015.00 5.15 49.80 100.0 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 7829.00 39.69 384.10 84.19 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 6770.00 34.32 332.15 88.35 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 443.00 80.55 21.73 100.0 SNHG14-336 lncRNA melanocyte of skin (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 3469.00 43.35 170.19 100.0 NCL-216 retained intron melanocyte of skin (Primary cell)