ENCFF000KFC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 4.00 5.06 0.20 100.0 RNY4-201 misc RNA melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 4339.00 7.48 212.88 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 50132.00 86.44 2459.54 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 5.00 0.27 0.25 38.46 WDR74-204 protein coding melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 6.00 0.05 0.29 100.0 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 6047.00 54.06 296.67 63.51 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2948.00 84.96 144.63 100.0 RPS13-208 retained intron melanocyte of skin (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 9507.00 83.30 466.43 100.0 HSPA8-215 retained intron melanocyte of skin (Primary cell)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2.00 0.06 0.10 100.0 RPS2-215 retained intron melanocyte of skin (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1703.00 69.00 83.55 100.0 RPL4-214 retained intron melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 5847.00 29.64 286.86 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 9917.00 50.27 486.54 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 5.00 0.37 0.25 100.0 SNORD3C-201 snoRNA melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.04 0.05 47.58 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1.73 0.06 0.08 86.48 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1609.00 60.17 78.94 100.0 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 64.00 7.83 3.14 100.0 RPS11-206 retained intron melanocyte of skin (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3.00 0.43 0.15 100.0 ENST00000602478 lncRNA melanocyte of skin (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 3168.00 61.96 155.43 100.0 NOP56-219 retained intron melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 37.74 0.30 1.85 35.27 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.01 0.05 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 6273.00 49.23 307.76 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 10.00 0.08 0.49 50.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 64.08 0.50 3.14 59.89 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 0.87 0.01 0.04 3.22 U2.3-201 snRNA melanocyte of skin (Primary cell)