ENCFF000KEJ

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.09 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 227.00 0.08 19.81 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 97689.00 34.60 8526.50 74.54 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 5118.00 70.51 446.71 100.0 ENST00000651540 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 39718.00 6.76 3466.67 96.8 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 515518.00 87.79 44995.49 96.4 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1195.00 0.20 104.30 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 2.00 0.00 0.17 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1314.00 0.22 114.69 100.0 SNHG29-232 lncRNA melanocyte of skin (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 3.00 2.48 0.26 100.0 SNHG14-234 lncRNA melanocyte of skin (Primary cell)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1.00 0.83 0.09 100.0 SNHG14-234 lncRNA melanocyte of skin (Primary cell)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 1.00 4.76 0.09 100.0 SNHG14-261 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2172.00 35.35 189.58 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 238.00 3.87 20.77 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1677.00 27.29 146.37 100.0 SNHG1-248 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 361.00 5.12 31.51 100.0 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 2161.00 30.68 188.62 76.31 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2801.00 39.76 244.48 87.12 SNHG5-273 lncRNA melanocyte of skin (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 276.00 76.67 24.09 100.0 SNHG14-336 lncRNA melanocyte of skin (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2650.00 65.27 231.30 100.0 NCL-216 retained intron melanocyte of skin (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2333.72 48.59 203.69 77.1 SNHG19-202 lncRNA melanocyte of skin (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 716.87 14.93 62.57 29.83 SNHG19-202 lncRNA melanocyte of skin (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 850.00 39.30 74.19 100.0 SNHG8-214 lncRNA melanocyte of skin (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 507.00 71.31 44.25 100.0 ENST00000722183 lncRNA melanocyte of skin (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 218.00 79.85 19.03 100.0 ENST00000747512 lncRNA melanocyte of skin (Primary cell)