ENCFF000KEJ

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 26.00 8.10 2.27 74.29 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 35.55 11.07 3.10 46.77 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 49.83 15.52 4.35 53.58 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1.00 0.31 0.09 100.0 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 9.00 0.57 0.79 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 453.00 28.84 39.54 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 18.00 1.52 1.57 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 3.00 0.25 0.26 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 3298.00 66.83 287.86 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 662.00 13.41 57.78 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8379.00 88.67 731.34 100.0 SNHG3-202 retained intron melanocyte of skin (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3195.00 75.14 278.87 100.0 SNORD124-201 snoRNA melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9.00 0.20 0.79 100.0 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3043.00 67.23 265.60 79.93 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1.00 2.94 0.09 100.0 RPL7A-206 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 592.00 4.40 51.67 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 10123.00 75.32 883.56 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 1543.00 32.87 134.68 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2503.00 53.32 218.47 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3728.00 51.31 325.39 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 921.00 12.68 80.39 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 16.00 0.22 1.40 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 28.00 0.02 2.44 100.0 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 180653.00 98.61 15767.77 99.5 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 38.00 4.00 3.32 100.0 RACK1-230 retained intron melanocyte of skin (Primary cell)