ENCFF000KCV

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 14.00 12.39 1.79 70.0 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 12.84 11.36 1.64 40.11 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 12.40 10.97 1.58 56.36 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 4.00 0.99 0.51 100.0 7SK.1-201 misc RNA fibroblast of dermis (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 159.00 39.26 20.30 100.0 7SK.1-201 misc RNA fibroblast of dermis (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.21 0.13 100.0 SNORD83A-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 3.00 0.64 0.38 75.0 SNORD83A-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 1.00 7.14 0.13 100.0 MT-TE-201 Mt tRNA fibroblast of dermis (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1341.00 57.83 171.24 100.0 SNORD12B-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 449.00 19.36 57.34 100.0 SNORD12B-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 3077.00 84.12 392.93 100.0 SNHG3-202 retained intron fibroblast of dermis (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2787.00 70.20 355.90 100.0 SNORD124-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.04 0.38 100.0 RPL3-212 retained intron fibroblast of dermis (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 5189.00 74.93 662.63 87.17 RPL3-212 retained intron fibroblast of dermis (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 521.00 4.34 66.53 100.0 RPL13A-212 retained intron fibroblast of dermis (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 10190.00 84.83 1301.26 100.0 RPL13A-212 retained intron fibroblast of dermis (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 2764.00 23.45 352.96 100.0 RPL7A-207 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7477.00 63.43 954.81 100.0 RPL7A-207 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4114.00 49.58 525.36 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 951.00 11.46 121.44 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 3.00 0.04 0.38 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 120835.00 98.37 15430.56 99.31 RPL5-205 retained intron fibroblast of dermis (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 21.00 0.02 2.68 100.0 RPL5-205 retained intron fibroblast of dermis (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 59.00 4.11 7.53 100.0 RACK1-230 retained intron fibroblast of dermis (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1307.00 4.87 166.90 100.0 SNHG6-204 retained intron fibroblast of dermis (Primary cell)