ENCFF000KCV

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 23862.00 88.97 3047.16 100.0 SNHG6-204 retained intron fibroblast of dermis (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 5.00 1.23 0.64 100.0 WDR74-204 protein coding fibroblast of dermis (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 6151.00 55.94 785.48 65.21 HSPA8-211 retained intron fibroblast of dermis (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 525.00 81.65 67.04 100.0 RPS13-208 retained intron fibroblast of dermis (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 2217.00 80.85 283.11 100.0 HSPA8-215 retained intron fibroblast of dermis (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 750.00 69.25 95.77 100.0 RPL4-214 retained intron fibroblast of dermis (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 241.00 17.94 30.78 100.0 ENST00000570843 lncRNA fibroblast of dermis (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 564.00 42.00 72.02 100.0 ENST00000570843 lncRNA fibroblast of dermis (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.13 0.24 63.44 C19orf48P-203 retained intron fibroblast of dermis (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.17 0.33 86.48 C19orf48P-203 retained intron fibroblast of dermis (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 928.00 62.03 118.51 100.0 C19orf48P-203 retained intron fibroblast of dermis (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 50.00 18.12 6.38 100.0 RPS11-206 retained intron fibroblast of dermis (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.31 0.13 100.0 ENST00000602478 lncRNA fibroblast of dermis (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 357.00 53.20 45.59 100.0 NOP56-219 retained intron fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 18.87 0.39 2.41 33.7 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2414.00 49.89 308.27 100.0 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 10.00 0.21 1.28 76.92 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 32.04 0.66 4.09 57.22 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 7.82 0.16 1.00 41.17 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 6.21 0.13 0.79 56.46 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 257.00 0.13 32.82 100.0 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 116770.00 57.82 14911.46 94.02 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 498.00 0.25 63.59 100.0 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 38857.00 19.24 4962.02 78.67 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2025.00 69.76 258.59 100.0 ENST00000651540 lncRNA fibroblast of dermis (Primary cell)