ENCFF000KCE

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 41266.00 88.14 2870.90 100.0 SNHG6-204 retained intron fibroblast of dermis (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 5.00 0.92 0.35 83.33 WDR74-204 protein coding fibroblast of dermis (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1.00 0.01 0.07 100.0 HSPA8-211 retained intron fibroblast of dermis (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 7002.00 55.87 487.13 64.14 HSPA8-211 retained intron fibroblast of dermis (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 489.00 73.64 34.02 100.0 RPS13-208 retained intron fibroblast of dermis (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 8028.00 82.82 558.51 100.0 HSPA8-215 retained intron fibroblast of dermis (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 737.00 66.94 51.27 100.0 RPL4-214 retained intron fibroblast of dermis (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 27.00 13.71 1.88 100.0 ENST00000570843 lncRNA fibroblast of dermis (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 98.00 49.75 6.82 100.0 ENST00000570843 lncRNA fibroblast of dermis (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.08 0.06 86.48 C19orf48P-203 retained intron fibroblast of dermis (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 569.00 55.73 39.59 100.0 C19orf48P-203 retained intron fibroblast of dermis (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 61.00 16.76 4.24 100.0 RPS11-206 retained intron fibroblast of dermis (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.26 0.07 100.0 ENST00000602478 lncRNA fibroblast of dermis (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 622.00 50.49 43.27 100.0 NOP56-219 retained intron fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 18.14 0.26 1.26 30.75 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4083.00 58.05 284.06 100.0 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 14.00 0.20 0.97 70.0 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 36.05 0.51 2.51 61.09 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 2.61 0.04 0.18 16.3 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 6.21 0.09 0.43 77.63 U2.3-201 snRNA fibroblast of dermis (Primary cell)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1.00 0.15 0.07 100.0 U2.6-201 snRNA fibroblast of dermis (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 2.00 0.73 0.14 100.0 SNHG14-224 lncRNA fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 2.00 0.00 0.14 100.0 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 777.00 0.18 54.06 100.0 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 188130.00 43.83 13088.31 91.95 GAS5-230 retained intron fibroblast of dermis (Primary cell)