ENCFF000KCE

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 23.00 12.64 1.60 85.19 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 34.73 19.08 2.42 51.08 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 30.59 16.81 2.13 52.74 RNU5A-1-201 snRNA fibroblast of dermis (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 7.00 0.80 0.49 100.0 7SK.1-201 misc RNA fibroblast of dermis (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 300.00 34.29 20.87 100.0 7SK.1-201 misc RNA fibroblast of dermis (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.17 0.07 100.0 SNORD83A-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 3.00 0.51 0.21 100.0 SNORD83A-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 367.00 19.59 25.53 100.0 SNORD12B-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1099.00 58.68 76.46 100.0 SNORD12B-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 6573.00 89.08 457.29 100.0 SNHG3-202 retained intron fibroblast of dermis (Primary cell)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 1.00 0.03 0.07 100.0 SNORD124-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2223.00 69.17 154.66 100.0 SNORD124-201 snoRNA fibroblast of dermis (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6.00 0.14 0.42 100.0 RPL3-212 retained intron fibroblast of dermis (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3318.00 75.07 230.84 88.03 RPL3-212 retained intron fibroblast of dermis (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 343.00 2.18 23.86 100.0 RPL13A-212 retained intron fibroblast of dermis (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12880.00 81.91 896.07 100.0 RPL13A-212 retained intron fibroblast of dermis (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4371.00 21.16 304.09 100.0 RPL7A-207 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 13768.00 66.65 957.85 100.0 RPL7A-207 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4031.00 51.30 280.44 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 886.00 11.28 61.64 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 7.00 0.09 0.49 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of dermis (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 155161.00 98.65 10794.63 99.46 RPL5-205 retained intron fibroblast of dermis (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 21.00 0.01 1.46 100.0 RPL5-205 retained intron fibroblast of dermis (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 31.00 2.94 2.16 100.0 RACK1-230 retained intron fibroblast of dermis (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2238.00 4.78 155.70 100.0 SNHG6-204 retained intron fibroblast of dermis (Primary cell)