ENCFF000JEF

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 7553.00 17.30 466.34 95.85 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 877.00 2.01 54.15 100.0 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 10624.00 24.33 655.94 80.34 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 5.00 0.01 0.31 100.0 ENST00000651540 lncRNA neural cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 62274.00 81.11 3844.90 100.0 ENST00000651540 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 19666.00 33.81 1214.21 99.6 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 34203.00 58.80 2111.75 93.44 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 288.00 0.50 17.78 100.0 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 32.00 0.06 1.98 100.0 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 74.00 1.38 4.57 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 12.00 0.22 0.74 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 62.00 1.16 3.83 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 2.00 0.04 0.12 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 3.00 0.10 0.19 100.0 SNHG14-241 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 332.00 0.78 20.50 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 26040.00 60.84 1607.75 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 7807.00 18.24 482.02 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 12.00 0.03 0.74 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 5.00 0.01 0.31 100.0 SNHG14-315 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 795.00 0.82 49.08 100.0 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 63689.00 65.46 3932.27 92.48 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 14021.00 14.41 865.68 88.4 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 1.00 0.00 0.06 100.0 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 16747.00 67.32 1033.99 100.0 SNHG14-336 lncRNA neural cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 6110.00 72.51 377.24 100.0 NCL-216 retained intron neural cell (In vitro differentiated cells)