ENCFF000JEF

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 21.90 4.58 1.35 17.8 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 42.00 8.79 2.59 84.0 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 22.32 4.67 1.38 76.97 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 3.00 50.00 0.19 100.0 SNORD115-9-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 7.00 0.28 0.43 100.0 RNU5B-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 1.00 14.29 0.06 100.0 SNORD115-5-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 4.00 0.02 0.25 100.0 RNY1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 103.00 3.10 6.36 100.0 7SK.1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1400.00 42.17 86.44 100.0 7SK.1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 1.00 100.00 0.06 100.0 MIR99B-201 miRNA neural cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 54.00 0.76 3.33 100.0 SNORD90-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 26915.00 63.43 1661.78 100.0 SNORD12B-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 10379.00 24.46 640.82 100.0 SNORD12B-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 68.00 0.55 4.20 100.0 TMEM107-204 protein coding neural cell (In vitro differentiated cells)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 2490.00 63.50 153.74 100.0 SNHG3-202 retained intron neural cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 424.00 68.94 26.18 100.0 SNORD124-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2297.00 48.26 141.82 70.07 RPL3-212 retained intron neural cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6.00 0.13 0.37 100.0 RPL3-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 481.00 0.32 29.70 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 351.00 0.24 21.67 98.6 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 117529.00 78.75 7256.44 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 7356.00 52.91 454.17 100.0 RPL7A-207 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 4908.00 35.30 303.03 100.0 RPL7A-207 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 623.00 24.37 38.47 100.0 RABGGTB-213 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 400.00 15.65 24.70 100.0 RABGGTB-213 protein coding CDS not defined neural cell (In vitro differentiated cells)