ENCFF000JEF

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 14448.00 97.01 892.04 99.99 RPL5-205 retained intron neural cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 5.00 0.03 0.31 100.0 RPL5-205 retained intron neural cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 1.00 50.00 0.06 100.0 COX7C-203 protein coding neural cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 1267.00 85.55 78.23 100.0 RACK1-230 retained intron neural cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1980.00 14.51 122.25 100.0 SNHG6-204 retained intron neural cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 9268.00 67.92 572.22 100.0 SNHG6-204 retained intron neural cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 379.00 9.56 23.40 62.13 WDR74-204 protein coding neural cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 782.00 48.91 48.28 62.61 HSPA8-211 retained intron neural cell (In vitro differentiated cells)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 583.00 89.01 36.00 100.0 RPS13-208 retained intron neural cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1.00 0.01 0.06 100.0 ENST00000554988 lncRNA neural cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 5416.00 68.58 334.39 100.0 RPL4-214 retained intron neural cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 988.00 82.61 61.00 100.0 ENST00000570843 lncRNA neural cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 85.00 7.11 5.25 100.0 ENST00000570843 lncRNA neural cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1.00 8.33 0.06 100.0 RPL23A-208 retained intron neural cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.06 0.12 21.15 C19orf48P-203 retained intron neural cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2680.00 79.24 165.47 100.0 C19orf48P-203 retained intron neural cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 164.00 5.65 10.13 100.0 RPS11-206 retained intron neural cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 637.00 59.31 39.33 100.0 NOP56-219 retained intron neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 108.86 4.38 6.72 34.02 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 263.00 10.59 16.24 100.0 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 228.29 9.19 14.10 71.34 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 10.43 0.42 0.64 86.92 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 21732.00 54.16 1341.77 100.0 SNHG14-224 lncRNA neural cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 11.00 0.03 0.68 100.0 SNHG14-224 lncRNA neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 289.00 0.66 17.84 100.0 GAS5-230 retained intron neural cell (In vitro differentiated cells)