ENCFF000JEF

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1213.01 39.64 74.89 65.11 SNHG19-202 lncRNA neural cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 662.11 21.64 40.88 46.24 SNHG19-202 lncRNA neural cell (In vitro differentiated cells)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 79.00 15.25 4.88 100.0 SNHG8-214 lncRNA neural cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 53.00 35.81 3.27 100.0 ENST00000722183 lncRNA neural cell (In vitro differentiated cells)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 20.00 100.00 1.23 100.0 ENST00000747512 lncRNA neural cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 56.00 0.09 3.46 100.0 ENST00000772672 lncRNA neural cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 54070.00 86.07 3338.37 100.0 ENST00000772672 lncRNA neural cell (In vitro differentiated cells)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1695.00 73.44 104.65 100.0 ENST00000788343 lncRNA neural cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 1.00 0.00 0.06 100.0 ENST00000823279 lncRNA neural cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 4065.00 10.11 250.98 27.86 ENST00000823279 lncRNA neural cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 1.00 0.06 0.06 100.0 ZFAS1-238 lncRNA neural cell (In vitro differentiated cells)