ENCFF000JOQ

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 37.00 7.87 0.96 82.22 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 82.30 17.51 2.14 49.58 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 62.00 13.19 1.62 48.44 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 15.00 0.71 0.39 100.0 7SK.1-201 misc RNA subcutaneous preadipocyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 716.00 33.97 18.66 100.0 7SK.1-201 misc RNA subcutaneous preadipocyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 13.00 0.54 0.34 100.0 SNORD83A-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 33.00 1.36 0.86 86.84 SNORD83A-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 884.00 17.82 23.04 100.0 SNORD12B-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 3086.00 62.19 80.41 100.0 SNORD12B-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 22050.00 90.88 574.58 100.0 SNHG3-202 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 4075.00 67.41 106.19 100.0 SNORD124-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 7487.00 72.04 195.10 86.3 RPL3-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4.00 0.04 0.10 100.0 RPL3-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 790.00 2.16 20.59 100.0 RPL13A-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 30284.00 82.90 789.14 100.0 RPL13A-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 33755.00 75.01 879.58 100.0 RPL7A-207 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 7028.00 15.62 183.14 100.0 RPL7A-207 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1.00 0.11 0.03 100.0 RN7SL2-201 misc RNA subcutaneous preadipocyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 5995.00 51.42 156.22 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1481.00 12.70 38.59 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 8.00 0.07 0.21 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 356305.00 98.61 9284.57 99.55 RPL5-205 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 31.00 0.01 0.81 100.0 RPL5-205 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 45.00 1.30 1.17 100.0 RACK1-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2487.00 3.56 64.81 100.0 SNHG6-204 retained intron subcutaneous preadipocyte (Primary cell)