ENCFF000JOQ

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 62684.00 89.85 1633.41 100.0 SNHG6-204 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 7.00 0.52 0.18 87.5 WDR74-204 protein coding subcutaneous preadipocyte (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 8703.00 53.93 226.78 62.72 HSPA8-211 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1897.00 76.65 49.43 100.0 RPS13-208 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 26104.00 84.16 680.22 100.0 HSPA8-215 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 955.00 60.98 24.89 100.0 RPL4-214 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 426.00 14.57 11.10 100.0 ENST00000570843 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 1797.00 61.46 46.83 100.0 ENST00000570843 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 2.00 0.16 0.05 100.0 SNORD3C-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.07 0.05 21.15 C19orf48P-203 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.10 0.07 28.83 C19orf48P-203 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1418.00 54.81 36.95 100.0 C19orf48P-203 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 60.00 6.76 1.56 100.0 RPS11-206 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 12.00 0.64 0.31 100.0 ENST00000602478 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 3448.00 48.26 89.85 100.0 NOP56-219 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1.00 7.69 0.03 100.0 RNA5-8SN2-201 rRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.01 0.03 100.0 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 35.56 0.26 0.93 35.56 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 6583.00 48.50 171.54 100.0 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 30.00 0.22 0.78 51.72 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 67.29 0.50 1.75 67.29 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 43.46 0.32 1.13 61.21 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 20.18 0.15 0.53 50.46 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 30.00 8.72 0.78 100.0 SNHG14-224 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.03 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)