ENCFF000JOQ

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 6553.00 0.55 170.76 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 315633.00 26.29 8224.74 93.36 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1190.00 0.10 31.01 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 459047.00 38.24 11961.81 62.79 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 2.00 0.04 0.05 100.0 ENST00000651540 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3534.00 76.61 92.09 100.0 ENST00000651540 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 42505.00 4.00 1107.59 98.53 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 969803.00 91.34 25271.04 97.48 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 4295.00 0.40 111.92 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.03 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1820.00 0.17 47.43 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 2.56 0.03 100.0 SNHG14-234 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 1.00 0.10 0.03 100.0 ENST00000655317 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 5891.00 15.85 153.51 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2237.00 6.02 58.29 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 1.00 0.00 0.03 50.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 17910.00 48.18 466.70 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1674.00 2.38 43.62 100.0 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 17203.00 24.44 448.27 74.88 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 38496.00 54.69 1003.13 91.07 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 610.00 86.04 15.90 100.0 SNHG14-336 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 3643.00 63.43 94.93 100.0 NCL-216 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 6661.77 47.15 173.59 65.54 SNHG19-202 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3536.80 25.03 92.16 37.91 SNHG19-202 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1788.00 43.57 46.59 100.0 SNHG8-214 lncRNA subcutaneous preadipocyte (Primary cell)