ENCFF000JOD

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of villous mesenchyme (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUX
Description: Part of ENCODE experiment ENCSR000CUX. The libraries contained in this experiment come from the villious placenta fibroblast primary whole cells, HVMF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 982.00 67.86 151.73 100.0 ENST00000651540 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 4070.00 1.89 628.85 99.05 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 188952.00 87.93 29194.48 92.28 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 569.00 0.26 87.91 100.0 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 690.00 0.32 106.61 100.0 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 4.55 0.15 100.0 SNHG14-234 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1385.00 26.57 213.99 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 137.00 2.63 21.17 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 1.00 0.02 0.15 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1669.00 32.02 257.87 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 145.00 1.91 22.40 100.0 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 1503.00 19.84 232.22 63.85 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 4187.00 55.27 646.92 86.58 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 180.00 78.60 27.81 100.0 SNHG14-336 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 546.00 65.70 84.36 100.0 NCL-216 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2706.66 51.65 418.20 73.65 SNHG19-202 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1065.58 20.34 164.64 33.69 SNHG19-202 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 278.00 36.77 42.95 100.0 SNHG8-214 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 131.00 59.82 20.24 100.0 ENST00000722183 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1.00 100.00 0.15 100.0 ENST00000747512 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 1.00 0.03 0.15 100.0 ENST00000772672 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 2971.00 92.64 459.04 100.0 ENST00000772672 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 7.00 1.26 1.08 5.88 ENST00000823279 lncRNA fibroblast of villous mesenchyme (Primary cell)