ENCFF000JOD

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of villous mesenchyme (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUX
Description: Part of ENCODE experiment ENCSR000CUX. The libraries contained in this experiment come from the villious placenta fibroblast primary whole cells, HVMF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 761.00 53.48 117.58 65.1 HSPA8-211 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 351.00 73.74 54.23 100.0 RPS13-208 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 908.00 84.39 140.29 100.0 HSPA8-215 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 551.00 67.44 85.13 100.0 RPL4-214 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 10.00 11.24 1.55 100.0 ENST00000570843 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 38.00 42.70 5.87 100.0 ENST00000570843 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.23 0.15 31.72 C19orf48P-203 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.62 0.40 86.48 C19orf48P-203 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 243.00 58.41 37.55 100.0 C19orf48P-203 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 25.00 15.82 3.86 100.0 RPS11-206 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.49 0.15 100.0 ENST00000602478 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 197.00 43.49 30.44 100.0 NOP56-219 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2.90 0.10 0.45 19.35 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1530.00 52.90 236.40 100.0 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 3.00 0.10 0.46 42.86 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 9.61 0.33 1.48 64.08 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 6.95 0.24 1.07 69.54 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 2.33 0.08 0.36 33.27 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 4.00 4.82 0.62 100.0 SNHG14-224 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.15 33.33 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 594.00 0.30 91.78 100.0 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 78033.00 39.50 12056.67 93.94 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.15 100.0 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 516.00 0.26 79.73 100.0 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 65507.00 33.16 10121.31 74.01 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)