ENCFF000JNK

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 117431.00 7.74 3333.45 95.81 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1314692.00 86.66 37319.48 96.64 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 4827.00 0.32 137.02 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 3.00 0.00 0.09 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 2531.00 0.17 71.85 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 2.00 0.87 0.06 100.0 SNHG14-234 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 5613.00 17.71 159.33 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2969.00 9.37 84.28 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 12475.00 39.36 354.12 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1276.00 5.84 36.22 100.0 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 7766.00 35.53 220.45 77.69 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 7004.00 32.04 198.82 84.26 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1021.00 77.23 28.98 100.0 SNHG14-336 lncRNA vein endothelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5723.00 68.99 162.46 100.0 NCL-216 retained intron vein endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 1.96 0.01 0.06 98.23 SNHG19-202 lncRNA vein endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 9275.20 54.70 263.29 78.88 SNHG19-202 lncRNA vein endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2279.58 13.44 64.71 25.5 SNHG19-202 lncRNA vein endothelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 2591.00 41.28 73.55 100.0 SNHG8-214 lncRNA vein endothelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1362.00 75.79 38.66 100.0 ENST00000722183 lncRNA vein endothelial cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 312.00 85.95 8.86 100.0 ENST00000747512 lncRNA vein endothelial cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 5.00 0.02 0.14 100.0 ENST00000772672 lncRNA vein endothelial cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 22342.00 90.54 634.21 100.0 ENST00000772672 lncRNA vein endothelial cell (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 9.00 1.46 0.26 32.14 ENST00000788343 lncRNA vein endothelial cell (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 19.00 1.01 0.54 4.97 ENST00000823279 lncRNA vein endothelial cell (Primary cell)