ENCFF000JNK

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 56950.00 88.65 1616.61 100.0 SNHG6-204 retained intron vein endothelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 4.00 0.33 0.11 80.0 WDR74-204 protein coding vein endothelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 336.00 57.63 9.54 79.06 HSPA8-211 retained intron vein endothelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1309.00 81.41 37.16 100.0 RPS13-208 retained intron vein endothelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 9731.00 84.28 276.23 100.0 HSPA8-215 retained intron vein endothelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1.00 0.01 0.03 100.0 HSPA8-215 retained intron vein endothelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1994.00 74.32 56.60 100.0 RPL4-214 retained intron vein endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 942.00 16.91 26.74 100.0 ENST00000570843 lncRNA vein endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2958.00 53.10 83.97 100.0 ENST00000570843 lncRNA vein endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2052.00 75.08 58.25 100.0 C19orf48P-203 retained intron vein endothelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 195.00 15.59 5.54 100.0 RPS11-206 retained intron vein endothelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1135.00 35.37 32.22 100.0 NOP56-219 retained intron vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 37.01 0.47 1.05 36.29 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3390.00 43.14 96.23 100.0 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 27.00 0.34 0.77 55.1 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 54.47 0.69 1.55 53.4 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 28.68 0.37 0.81 75.49 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 15.53 0.20 0.44 59.71 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 31.00 3.53 0.88 100.0 SNHG14-224 lncRNA vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 3068.00 0.32 87.09 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 343900.00 35.52 9762.11 94.23 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.03 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1874.00 0.19 53.20 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 336393.00 34.74 9549.01 70.39 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3667.00 78.15 104.09 100.0 ENST00000651540 lncRNA vein endothelial cell (Primary cell)