ENCFF000JMV

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 88.00 10.60 1.94 100.0 SNHG14-224 lncRNA placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 3532.00 0.28 77.85 100.0 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 546031.00 43.49 12034.70 95.72 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2165.00 0.17 47.72 100.0 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 394054.00 31.39 8685.07 75.08 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 5.00 0.08 0.11 100.0 ENST00000651540 lncRNA placental epithelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 4725.00 71.88 104.14 100.0 ENST00000651540 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 55532.00 4.05 1223.94 98.74 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1247031.00 91.00 27484.96 96.87 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 5044.00 0.37 111.17 100.0 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1096.00 0.08 24.16 100.0 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 0.52 0.02 100.0 SNHG14-234 lncRNA placental epithelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 0.52 0.02 100.0 SNHG14-234 lncRNA placental epithelial cell (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 3.00 0.18 0.07 100.0 ENST00000655317 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 47711.00 58.87 1051.57 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2605.00 3.21 57.42 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 12897.00 15.91 284.25 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 769.00 1.49 16.95 100.0 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 12599.00 24.47 277.69 68.89 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 26143.00 50.77 576.20 91.25 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 872.00 72.31 19.22 100.0 SNHG14-336 lncRNA placental epithelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1926.00 63.80 42.45 100.0 NCL-216 retained intron placental epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 0.99 0.01 0.02 99.0 SNHG19-202 lncRNA placental epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 8654.24 48.13 190.74 73.37 SNHG19-202 lncRNA placental epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3002.21 16.70 66.17 32.24 SNHG19-202 lncRNA placental epithelial cell (Primary cell)