ENCFF000JMV

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 24.00 0.01 0.53 100.0 RPL5-205 retained intron placental epithelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 23.00 1.17 0.51 100.0 RACK1-230 retained intron placental epithelial cell (Primary cell)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 5.00 8.20 0.11 100.0 RNY4-201 misc RNA placental epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 4377.00 4.07 96.47 100.0 SNHG6-204 retained intron placental epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 95643.00 88.90 2108.00 100.0 SNHG6-204 retained intron placental epithelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 7.00 0.58 0.15 87.5 WDR74-204 protein coding placental epithelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 9424.00 57.01 207.71 68.83 HSPA8-211 retained intron placental epithelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2690.00 85.40 59.29 100.0 RPS13-208 retained intron placental epithelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 5559.00 89.32 122.52 100.0 HSPA8-215 retained intron placental epithelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 2284.00 70.93 50.34 100.0 RPL4-214 retained intron placental epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 562.00 13.19 12.39 100.0 ENST00000570843 lncRNA placental epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2458.00 57.69 54.18 100.0 ENST00000570843 lncRNA placental epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.02 0.02 15.86 C19orf48P-203 retained intron placental epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 4.32 0.10 0.10 86.48 C19orf48P-203 retained intron placental epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2826.00 66.40 62.29 100.0 C19orf48P-203 retained intron placental epithelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 121.00 11.15 2.67 100.0 RPS11-206 retained intron placental epithelial cell (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2.00 0.26 0.04 100.0 ENST00000602478 lncRNA placental epithelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 876.00 37.10 19.31 100.0 NOP56-219 retained intron placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.01 0.02 100.0 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 60.24 0.59 1.33 36.07 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4862.00 47.99 107.16 100.0 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 9.00 0.09 0.20 50.0 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 105.73 1.04 2.33 63.31 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 9.56 0.09 0.21 23.9 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 25.62 0.25 0.56 71.16 U2.3-201 snRNA placental epithelial cell (Primary cell)