ENCFF000JMV

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 151.01 20.77 3.33 54.12 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 70.00 9.63 1.54 81.4 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 133.09 18.31 2.93 56.16 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1.00 0.24 0.02 100.0 RNU5B-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 10.00 0.38 0.22 100.0 7SK.1-201 misc RNA placental epithelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 965.00 36.22 21.27 100.0 7SK.1-201 misc RNA placental epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 16.00 0.75 0.35 94.12 SNORD83A-201 snoRNA placental epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 17.00 0.79 0.37 100.0 SNORD83A-201 snoRNA placental epithelial cell (Primary cell)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 1.00 5.88 0.02 100.0 MT-TE-201 Mt tRNA placental epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1190.00 14.16 26.23 100.0 SNORD12B-201 snoRNA placental epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 5330.00 63.43 117.47 100.0 SNORD12B-201 snoRNA placental epithelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 15508.00 86.35 341.80 100.0 SNHG3-202 retained intron placental epithelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3761.00 69.42 82.89 100.0 SNORD124-201 snoRNA placental epithelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8.00 0.07 0.18 100.0 RPL3-212 retained intron placental epithelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 6162.00 51.69 135.81 73.18 RPL3-212 retained intron placental epithelial cell (Primary cell)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1.00 0.89 0.02 100.0 RPL7A-206 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 27615.00 76.02 608.64 100.0 RPL13A-212 retained intron placental epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 757.00 2.08 16.68 100.0 RPL13A-212 retained intron placental epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 23238.00 62.52 512.17 100.0 RPL7A-207 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 7081.00 19.05 156.07 100.0 RPL7A-207 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1.00 0.06 0.02 100.0 RN7SL2-201 misc RNA placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 7978.00 36.54 175.84 100.0 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 10.00 0.05 0.22 100.0 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 3483.00 15.95 76.77 100.0 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 473293.00 98.76 10431.53 99.59 RPL5-205 retained intron placental epithelial cell (Primary cell)