ENCFF000JLA

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 321.00 8.59 11.43 56.71 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 496.06 13.28 17.67 40.3 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 6.00 0.16 0.21 100.0 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 325.70 8.72 11.60 40.82 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1.00 0.06 0.04 100.0 RNU5B-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 816.00 38.82 29.07 100.0 7SK.1-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 1.00 0.05 0.04 100.0 7SK.1-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 3.00 0.32 0.11 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 13.00 1.40 0.46 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1026.00 32.73 36.55 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1446.00 46.12 51.51 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 2.00 0.52 0.07 100.0 SNORD62B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 21987.00 91.37 783.20 100.0 SNHG3-202 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1.00 0.55 0.04 100.0 SNORD127-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 5857.00 72.37 208.63 100.0 SNORD124-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4.00 0.12 0.14 100.0 RPL3-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2206.00 65.85 78.58 85.4 RPL3-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 7.00 0.01 0.25 87.5 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1.00 0.00 0.04 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1505.00 2.32 53.61 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 49309.00 76.07 1756.43 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 13618.00 36.32 485.08 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 18431.00 49.16 656.53 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 733.00 11.41 26.11 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 8.00 0.12 0.28 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)