ENCFF000JLA

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2983.58 43.06 106.28 75.23 SNHG19-202 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1195.98 17.26 42.60 43.02 SNHG19-202 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1743.00 39.43 62.09 100.0 SNHG8-214 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 6879.00 72.96 245.04 100.0 ENST00000722183 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 7681.00 82.25 273.60 100.0 ENST00000747512 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 13.00 0.05 0.46 100.0 ENST00000772672 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 22749.00 85.36 810.34 100.0 ENST00000772672 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 8.00 4.76 0.28 100.0 ENST00000788343 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 4.00 0.13 0.14 100.0 ENST00000823279 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 107.00 3.51 3.81 17.72 ENST00000823279 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)