ENCFF000JLA

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 169.81 1.99 6.05 69.03 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 26.08 0.31 0.93 30.68 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 44.25 0.52 1.58 60.61 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 25.00 2.62 0.89 100.0 SNHG14-224 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 6121.00 1.00 218.04 100.0 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 88537.00 14.50 3153.76 94.63 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 662.00 0.11 23.58 100.0 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 289949.00 47.49 10328.23 76.31 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1.00 0.01 0.04 100.0 ENST00000651540 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 7378.00 75.97 262.81 100.0 ENST00000651540 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 233471.00 27.08 8316.44 98.36 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 583229.00 67.65 20775.11 96.85 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 3001.00 0.35 106.90 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 2.00 0.00 0.07 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 434.00 0.05 15.46 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1.00 0.27 0.04 100.0 SNHG14-234 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 2.00 1.92 0.07 100.0 SNHG14-261 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4981.00 13.96 177.43 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 12312.00 34.51 438.56 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 8864.00 24.85 315.74 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 3723.00 7.56 132.62 100.0 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 21585.00 43.85 768.88 83.61 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 12334.00 25.06 439.35 85.04 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1144.00 76.01 40.75 100.0 SNHG14-336 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5631.00 69.60 200.58 100.0 NCL-216 retained intron mesenchymal stem cell of the bone marrow (Primary cell)