ENCFF000JLA

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3334.00 51.91 118.76 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 464194.00 98.05 16534.99 99.7 RPL5-205 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 161.00 0.03 5.73 100.0 RPL5-205 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 5910.00 48.33 210.52 100.0 RACK1-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 9.00 2.34 0.32 100.0 RNY4-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 4133.00 14.03 147.22 100.0 SNHG6-204 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 21157.00 71.81 753.63 100.0 SNHG6-204 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 35.00 1.28 1.25 70.0 WDR74-204 protein coding mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 4284.00 52.23 152.60 63.61 HSPA8-211 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 4914.00 87.73 175.04 100.0 RPS13-208 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 8581.00 85.40 305.66 100.0 HSPA8-215 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1.00 0.02 0.04 100.0 ENST00000554988 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 3092.00 69.99 110.14 100.0 RPL4-214 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 1196.00 57.47 42.60 100.0 ENST00000570843 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 459.00 22.06 16.35 100.0 ENST00000570843 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1.00 0.06 0.04 100.0 SNORD3C-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 471.00 51.36 16.78 100.0 C19orf48P-203 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 51.00 6.61 1.82 100.0 RPS11-206 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 8.00 0.63 0.28 100.0 ENST00000602478 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 13310.00 68.81 474.11 100.0 NOP56-219 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 2.00 0.02 0.07 100.0 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 90.72 1.06 3.23 36.88 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 4.00 0.05 0.14 20.0 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2380.00 27.87 84.78 100.0 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 65.00 0.76 2.32 90.28 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)