ENCFF000JKU

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 350.00 15.13 113.09 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 334.00 10.98 107.92 100.0 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 1209.00 39.76 390.63 83.26 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 739.00 24.30 238.77 84.75 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 70.00 66.04 22.62 100.0 SNHG14-336 lncRNA osteoblast (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 153.00 57.74 49.43 100.0 NCL-216 retained intron osteoblast (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1952.38 48.54 630.82 81.9 SNHG19-202 lncRNA osteoblast (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 440.21 10.95 142.23 26.61 SNHG19-202 lncRNA osteoblast (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 125.00 41.25 40.39 100.0 SNHG8-214 lncRNA osteoblast (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 3071.00 72.53 992.25 100.0 ENST00000722183 lncRNA osteoblast (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 417.00 77.65 134.73 100.0 ENST00000772672 lncRNA osteoblast (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 1.00 1.79 0.32 20.0 ENST00000823279 lncRNA osteoblast (Primary cell)