ENCFF000JKU

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 227.00 65.61 73.34 100.0 RPL4-214 retained intron osteoblast (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 55.00 35.03 17.77 100.0 ENST00000570843 lncRNA osteoblast (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 36.00 22.93 11.63 100.0 ENST00000570843 lncRNA osteoblast (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1.73 0.57 0.56 86.48 C19orf48P-203 retained intron osteoblast (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 153.00 50.00 49.43 100.0 C19orf48P-203 retained intron osteoblast (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 27.00 17.88 8.72 100.0 RPS11-206 retained intron osteoblast (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 102.00 36.56 32.96 100.0 NOP56-219 retained intron osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2.18 0.37 0.70 54.43 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 255.00 43.15 82.39 100.0 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 1.00 0.17 0.32 50.0 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2.40 0.41 0.78 60.08 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 0.87 0.15 0.28 86.92 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 0.78 0.13 0.25 77.63 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 2.00 6.67 0.65 100.0 SNHG14-224 lncRNA osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 42.00 0.04 13.57 100.0 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 48655.00 47.28 15720.61 92.82 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 197.00 0.19 63.65 100.0 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 7566.00 7.35 2444.60 85.23 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 250.00 64.94 80.78 100.0 ENST00000651540 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 21055.00 23.91 6802.95 97.78 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 52044.00 59.09 16815.61 91.33 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 186.00 0.21 60.10 100.0 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 305.00 0.35 98.55 100.0 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 447.00 19.32 144.43 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 339.00 14.65 109.53 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)