ENCFF000JKT

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 33.00 9.79 1.68 67.35 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 52.85 15.68 2.68 52.85 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 45.47 13.49 2.31 56.13 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 4.00 0.54 0.20 100.0 7SK.1-201 misc RNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 247.00 33.65 12.54 100.0 7SK.1-201 misc RNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 8.00 0.35 0.41 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 12.00 0.52 0.61 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1214.00 16.20 61.64 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 4576.00 61.05 232.35 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 0.82 0.05 100.0 SNORD62B-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 21002.00 91.78 1066.41 100.0 SNHG3-202 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 5766.00 76.75 292.78 100.0 SNORD124-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9.00 0.08 0.46 100.0 RPL3-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 2.00 0.02 0.10 100.0 RPL3-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 8123.00 76.07 412.46 87.41 RPL3-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14932.00 72.22 758.20 100.0 RPL13A-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1137.00 5.50 57.73 100.0 RPL13A-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.00 0.05 100.0 RPL13A-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 11982.00 63.34 608.41 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4413.00 23.33 224.08 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 6.00 0.05 0.30 85.71 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 5476.00 41.71 278.05 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 2292.00 17.46 116.38 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 32.00 0.01 1.62 100.0 RPL5-205 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 406237.00 98.64 20627.36 99.52 RPL5-205 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)