ENCFF000JKT

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 42.00 1.68 2.13 100.0 RACK1-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 4.00 22.22 0.20 100.0 RNY4-201 misc RNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1886.00 4.09 95.76 100.0 SNHG6-204 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 41503.00 90.07 2107.38 100.0 SNHG6-204 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 0.62 0.30 100.0 WDR74-204 protein coding mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 2957.00 55.47 150.15 66.32 HSPA8-211 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2190.00 86.08 111.20 100.0 RPS13-208 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 10445.00 86.57 530.36 100.0 HSPA8-215 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1261.00 66.97 64.03 100.0 RPL4-214 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2269.00 16.51 115.21 100.0 ENST00000570843 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 8182.00 59.54 415.45 100.0 ENST00000570843 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.03 0.04 86.48 C19orf48P-203 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1727.00 62.26 87.69 100.0 C19orf48P-203 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 101.00 14.94 5.13 100.0 RPS11-206 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 9.00 1.46 0.46 100.0 ENST00000602478 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1021.00 44.01 51.84 100.0 NOP56-219 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 20.32 0.31 1.03 44.18 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 4.00 0.06 0.20 100.0 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2965.00 44.59 150.55 100.0 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 31.00 0.47 1.57 72.09 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 24.83 0.37 1.26 53.98 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 4.35 0.07 0.22 33.43 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 5.43 0.08 0.28 60.38 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 20.00 6.17 1.02 100.0 SNHG14-224 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1286.00 0.24 65.30 100.0 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)