ENCFF000JKT

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 239882.00 45.14 12180.41 95.99 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 708.00 0.13 35.95 100.0 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 169067.00 31.82 8584.66 77.8 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2919.00 73.53 148.22 100.0 ENST00000651540 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 32545.00 4.68 1652.53 99.04 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 623459.00 89.70 31657.16 96.49 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 2344.00 0.34 119.02 100.0 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.05 100.0 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1368.00 0.20 69.46 100.0 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 7091.00 29.04 360.06 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1543.00 6.32 78.35 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 8068.00 33.05 409.67 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1135.00 4.83 57.63 100.0 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 6735.00 28.68 341.98 78.95 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 10943.00 46.60 555.65 91.87 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 492.00 79.35 24.98 100.0 SNHG14-336 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2715.00 66.07 137.86 100.0 NCL-216 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 6895.79 52.45 350.15 71.95 SNHG19-202 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2587.94 19.68 131.41 31.82 SNHG19-202 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1257.00 46.78 63.83 100.0 SNHG8-214 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1912.00 63.23 97.08 100.0 ENST00000722183 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 9786.00 84.12 496.90 100.0 ENST00000747512 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 1.00 0.09 0.05 100.0 ENST00000756336 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 3.00 0.01 0.15 100.0 ENST00000772672 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 21267.00 90.92 1079.87 100.0 ENST00000772672 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)