ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 49.00 0.43 0.03 45.37 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 20.00 0.17 0.01 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 40.00 0.35 0.02 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 7294.00 63.79 4.43 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 59.00 0.52 0.04 54.63 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 4.00 22.22 0.00 100.0 MIR124-1HG-216 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 53.00 8.37 0.03 100.0 SNHG10-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 199639.07 81.59 121.12 83.25 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 41674.70 17.03 25.28 31.74 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2.80 0.00 0.00 23.31 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 8.65 0.00 0.01 72.05 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4151.00 76.86 2.52 100.0 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 596.00 11.03 0.36 94.9 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 116.00 2.15 0.07 100.0 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 9321.00 24.53 5.66 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 212.00 0.56 0.13 43.8 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 2424.00 6.38 1.47 82.42 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 272.00 0.72 0.17 67.33 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 500.11 1.32 0.30 31.24 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 5941.00 15.63 3.60 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 2305.00 6.06 1.40 88.45 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 6889.00 18.13 4.18 86.09 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_490_+ 458–490 158.00 0.42 0.10 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 3388.00 8.91 2.06 60.3 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 47.00 9.33 0.03 100.0 RPSA-216 retained intron neural progenitor cell (In vitro differentiated cells)