ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 2978783.00 22.36 1807.25 99.58 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 7630.00 0.06 4.63 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 65.00 0.00 0.04 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 817.00 0.01 0.50 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 20275.00 0.15 12.30 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 998.00 0.01 0.61 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 55.00 0.00 0.03 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 210128.00 1.58 127.49 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 2382.00 0.02 1.45 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 529.00 0.00 0.32 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 1119703.00 8.40 679.33 98.39 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 138.00 0.00 0.08 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 492079.00 3.69 298.55 90.24 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 439.00 0.00 0.27 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 243.00 0.00 0.15 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 61.00 0.00 0.04 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 272074.00 2.04 165.07 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2367.00 0.02 1.44 72.01 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 380.48 0.00 0.23 32.97 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 128.00 0.00 0.08 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2815.00 0.02 1.71 59.89 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 477.00 0.00 0.29 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 2493.00 0.02 1.51 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 6080.00 0.05 3.69 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 567760.00 30.64 344.46 100.0 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)