ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 81.00 0.00 0.05 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 587.00 0.02 0.36 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 1466.00 0.05 0.89 67.34 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1112.00 0.03 0.67 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 108833.00 3.35 66.03 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 41357.00 1.27 25.09 99.78 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 357788.00 11.03 217.07 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 240.00 0.01 0.15 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 43704.00 1.35 26.52 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 449059.00 13.84 272.45 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 3.00 0.00 0.00 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 4387.00 0.14 2.66 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 44.00 1.68 0.03 100.0 FTX-219 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2055.00 78.56 1.25 96.93 FTX-219 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 84.00 0.39 0.05 6.7 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 6653.00 30.81 4.04 94.54 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 1291.00 5.98 0.78 77.96 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 1170.00 5.42 0.71 93.3 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1161.00 5.38 0.70 79.96 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 6990.00 32.37 4.24 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 515.00 2.38 0.31 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 688.00 3.19 0.42 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 5163.00 9.20 3.13 68.04 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2226.00 3.97 1.35 98.8 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 134.00 0.24 0.08 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)