ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 3.00 27.27 0.00 100.0 MIR378C-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 214.00 0.55 0.13 100.0 SNORD3C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 19103.99 1.06 11.59 63.34 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 11357.73 0.63 6.89 49.24 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 405150.00 22.56 245.81 51.07 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 1341647.00 74.71 813.99 95.99 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2845.00 0.35 1.73 17.04 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 3569.00 0.44 2.17 9.2 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 2336.00 0.29 1.42 100.0 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 550639.00 68.28 334.08 99.63 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 226799.00 28.12 137.60 99.28 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 40.00 0.00 100.0 ENST00000582320 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 123463.00 48.63 74.91 100.0 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 32649.41 12.86 19.81 32.21 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 79180.21 31.19 48.04 68.0 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 30.00 0.00 0.02 100.0 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1550489.00 99.44 940.69 99.77 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 77.00 0.00 0.05 100.0 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 48.00 61.54 0.03 100.0 MIR151B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 238.00 0.58 0.14 100.0 SNORD3A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 11288.00 84.94 6.85 100.0 SNORD92-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3171.00 39.69 1.92 100.0 NSRP1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4137.00 51.78 2.51 94.52 NSRP1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 501.00 63.74 0.30 100.0 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 22.00 2.80 0.01 84.62 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)