ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 659.00 0.99 0.40 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 4625.00 15.45 2.81 100.0 RN7SL2-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 471.00 1.57 0.29 36.12 RN7SL2-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 249829.00 94.93 151.57 99.43 NOP56-217 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2394.00 0.91 1.45 99.92 NOP56-217 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 265.00 0.04 0.16 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 28812.00 4.65 17.48 86.89 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 132.00 0.02 0.08 82.5 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 561682.00 90.68 340.78 98.59 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 28.00 0.00 0.02 17.5 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2657.00 0.43 1.61 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1773.00 0.29 1.08 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 462.00 1.72 0.28 100.0 GNL3-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 24930.00 92.79 15.13 100.0 GNL3-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 3.00 0.02 0.00 100.0 RPL5-205 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 13014.00 80.42 7.90 100.0 RPL5-205 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 701.00 4.33 0.43 100.0 RPL5-205 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 22766.00 64.02 13.81 100.0 ZBED9-AS1-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 8530.00 78.81 5.18 100.0 RPS3A-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 45084.00 98.54 27.35 100.0 COX7C-203 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 343605.05 78.24 208.47 79.83 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 67905.18 15.46 41.20 15.66 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 224.00 0.05 0.14 69.78 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4.00 0.00 0.00 100.0 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)