ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 3.00 60.00 0.00 100.0 MIR889-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 32802.00 86.97 19.90 100.0 SNORD111-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4885.00 43.75 2.96 63.63 SNORD88A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 64.00 100.00 0.04 100.0 MIR548K-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 110.00 67.07 0.07 100.0 MIR320B2-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 27.00 93.10 0.02 100.0 MIR1271-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 396.00 0.24 0.24 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 157503.00 96.84 95.56 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1498.00 0.92 0.91 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 196.00 0.12 0.12 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 520.00 20.11 0.32 100.0 SNORD111B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 218.00 6.69 0.13 100.0 RNU2-36P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 236.00 7.24 0.14 100.0 RNU2-36P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 297.00 0.09 0.18 100.0 SNORD19C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 298650.00 92.68 181.19 94.28 SNORD19C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 678957.00 91.48 411.93 95.83 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 16353.00 2.20 9.92 100.0 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1224.00 0.16 0.74 100.0 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 94.00 39.83 0.06 100.0 Y_RNA.609-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 12.00 34.29 0.01 100.0 Y_RNA.612-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 4637.00 7.40 2.81 100.0 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 13.00 0.02 0.01 100.0 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 55574.00 88.72 33.72 96.9 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 510.00 72.44 0.31 90.27 MIR194-2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 165.00 23.44 0.10 71.43 MIR194-2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)