ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 36.00 90.00 0.02 100.0 MIR509-3-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 2.00 66.67 0.00 100.0 MIR543-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 194.00 96.52 0.12 100.0 MIR301B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1062.00 57.59 0.64 74.16 RNU1-82P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 581.00 31.70 0.35 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 119.00 6.49 0.07 61.98 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 47.00 2.56 0.03 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 232.00 12.66 0.14 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 8.00 36.36 0.00 100.0 U3.17-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 379.00 17.04 0.23 100.0 SNORD17-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 766.00 37.49 0.46 100.0 SNORD72-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 8345.00 83.51 5.06 100.0 SNORD70B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 886.00 40.09 0.54 94.86 RNY4P18-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 8550.00 43.15 5.19 100.0 SNORD90-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 8084.00 40.80 4.90 75.45 SNORD90-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 375.00 0.24 0.23 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 259.00 0.17 0.16 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 327.00 0.21 0.20 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 152704.00 97.43 92.65 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 14347.00 72.50 8.70 92.26 SNORD70-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 268.00 1.74 0.16 100.0 B4GALNT2-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 11356.00 73.89 6.89 83.87 B4GALNT2-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 235.00 79.93 0.14 100.0 NDE1-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 2.00 100.00 0.00 100.0 MIR450B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 106.00 65.03 0.06 100.0 MIR887-201 miRNA neural progenitor cell (In vitro differentiated cells)