ENCFF993BFO

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR099ACU
Description: Part of ENCODE experiment ENCSR099ACU. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 359.00 29.05 3.48 73.72 SNHG14-336 lncRNA body of pancreas (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 6.00 3.64 0.06 100.0 SNHG14-341 lncRNA body of pancreas (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 36.00 22.93 0.35 100.0 FMN2-209 protein coding CDS not defined body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 46331.00 50.75 449.21 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 188.00 0.21 1.82 12.93 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 1021.00 1.12 9.90 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2481.00 2.72 24.05 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 40.00 0.04 0.39 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 1266.00 1.39 12.27 87.07 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 326.00 23.19 3.16 100.0 SNHG10-212 lncRNA body of pancreas (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 2239.49 43.56 21.71 48.11 SNHG19-202 lncRNA body of pancreas (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 2394.77 46.58 23.22 57.64 SNHG19-202 lncRNA body of pancreas (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 774.00 56.25 7.50 100.0 MIR222HG-206 lncRNA body of pancreas (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 410.00 29.80 3.98 82.33 MIR222HG-206 lncRNA body of pancreas (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 26.00 1.89 0.25 100.0 MIR222HG-206 lncRNA body of pancreas (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 67.00 22.56 0.65 100.0 RPSA-216 retained intron body of pancreas (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1315.00 15.64 12.75 94.74 MIR99AHG-370 lncRNA body of pancreas (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 6328.00 75.27 61.35 97.79 MIR99AHG-370 lncRNA body of pancreas (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 122.00 85.92 1.18 100.0 HPS4-237 retained intron body of pancreas (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 337.00 89.87 3.27 100.0 MEG8-253 lncRNA body of pancreas (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 623.00 42.64 6.04 100.0 MEG9-206 lncRNA body of pancreas (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 24.00 8.36 0.23 100.0 DNAJC5-203 nonsense mediated decay body of pancreas (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 4036.00 25.49 39.13 100.0 ENST00000707189 TEC body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 72.00 0.23 0.70 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 10446.61 33.61 101.29 39.41 MIR17HG-214 lncRNA body of pancreas (Tissue)