ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 2463.00 0.11 2.75 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2083.00 0.09 2.33 76.69 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 19061.00 0.84 21.29 90.44 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 200.00 0.01 0.22 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 72.00 0.00 0.08 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 3425.00 0.15 3.82 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1481799.00 65.23 1654.72 99.86 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 973.00 0.04 1.09 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 7211.00 0.32 8.05 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1796.00 0.08 2.01 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1974.00 0.09 2.20 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 5098.00 0.22 5.69 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 35.00 0.00 0.04 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 519.00 0.02 0.58 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1279.00 0.06 1.43 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7590.00 0.33 8.48 76.87 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 8672.00 0.38 9.68 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 66073.00 2.91 73.78 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 74623.00 3.28 83.33 95.68 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 290136.00 12.77 323.99 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 197.00 0.01 0.22 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 12473.00 0.55 13.93 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 243300.00 10.71 271.69 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 2.00 0.00 0.00 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 1075.00 0.05 1.20 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)