ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 44613.00 96.58 49.82 100.0 ENST00000628177 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 17038.00 95.37 19.03 100.0 ENST00000630615 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 256.00 58.18 0.29 100.0 DMRT2-209 protein coding hepatocyte (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 37.00 8.41 0.04 100.0 DMRT2-209 protein coding hepatocyte (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 667.00 12.34 0.74 100.0 SNORD98-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 3904.00 72.26 4.36 100.0 SNORD98-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 96565.43 64.28 107.83 66.28 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 33.75 0.02 0.04 32.77 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 10.00 0.01 0.01 100.0 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 68.16 0.05 0.08 66.17 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 25.00 7.76 0.03 100.0 MEG8-222 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 75.00 23.29 0.08 100.0 MEG8-222 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 23206.00 4.52 25.91 94.79 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 211993.00 41.27 236.73 96.02 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 134042.00 26.10 149.68 100.0 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 74805.00 14.56 83.53 95.47 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 565.00 0.11 0.63 100.0 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 5865.00 1.14 6.55 54.79 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 17202.00 3.35 19.21 83.61 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 7114.00 1.38 7.94 48.99 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 4889.61 3.17 5.46 48.87 5S_rRNA.20-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 3781.00 13.57 4.22 100.0 HSPA9-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 15413.00 55.30 17.21 76.34 HSPA9-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 15736.00 58.22 17.57 100.0 DNM3OS-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1090.00 0.05 1.22 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)