ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 213.00 45.22 0.24 100.0 GABRE-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1429.00 0.31 1.60 63.57 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1499.00 0.32 1.67 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 340512.00 73.34 380.25 99.02 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 74218.00 15.99 82.88 78.94 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 229.00 0.05 0.26 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 11.00 0.00 0.01 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1025.00 0.22 1.14 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 2386.00 0.51 2.66 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 210.00 0.74 0.23 100.0 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 16574.00 58.73 18.51 68.89 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 279.00 0.99 0.31 100.0 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 4434.00 11.88 4.95 100.0 RN7SL2-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1639.00 4.39 1.83 29.8 RN7SL2-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 3.00 17.65 0.00 100.0 RGS11-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 169145.00 78.07 188.88 82.29 NOP56-217 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 6184.00 2.85 6.91 94.76 NOP56-217 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 721.00 0.12 0.81 56.59 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2812.00 0.45 3.14 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 5349.00 0.87 5.97 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 553.00 0.09 0.62 43.41 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 395617.00 63.98 441.79 90.68 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 150265.00 24.30 167.80 94.78 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 838.00 0.14 0.94 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 27316.00 87.78 30.50 100.0 GNL3-211 retained intron hepatocyte (In vitro differentiated cells)