ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 1731.00 64.09 1.93 89.69 RNY4P18-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 74685.00 84.37 83.40 100.0 SNORD90-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 10654.00 12.03 11.90 63.92 SNORD90-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1720.00 1.20 1.92 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 759.00 0.53 0.85 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2019.00 1.40 2.25 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 135618.00 94.37 151.44 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 10075.00 56.61 11.25 62.18 SNORD70-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 12554.00 69.76 14.02 84.14 B4GALNT2-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 879.00 4.88 0.98 100.0 B4GALNT2-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 858.00 86.84 0.96 100.0 NDE1-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 51.00 52.58 0.06 100.0 MIR450B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 479.00 65.89 0.53 100.0 MIR887-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 30.00 85.71 0.03 100.0 MIR889-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 6269.00 85.20 7.00 100.0 SNORD111-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4386.00 72.51 4.90 87.86 SNORD88A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 47.00 92.16 0.05 100.0 MIR548K-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 306.00 64.15 0.34 100.0 MIR320B2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 74.00 92.50 0.08 100.0 MIR1271-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 1018.00 0.47 1.14 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 204867.00 95.54 228.77 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 3053.00 1.42 3.41 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 698.00 0.33 0.78 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1431.00 33.34 1.60 100.0 SNORD111B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 166.00 4.21 0.19 100.0 RNU2-36P-201 snRNA hepatocyte (In vitro differentiated cells)