ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 1248.00 0.53 1.39 79.8 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 32.00 0.01 0.04 100.0 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 172938.00 73.58 193.12 85.9 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 316.00 0.13 0.35 25.97 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 2761.00 1.17 3.08 100.0 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 116.00 58.00 0.13 100.0 MIR196A1-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 5427.00 7.58 6.06 100.0 MT-RNR1-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 32080.00 44.81 35.82 100.0 MT-RNR1-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 316.00 74.70 0.35 100.0 MIR454-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 1013.00 52.06 1.13 100.0 MIR501-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 2051.00 91.81 2.29 100.0 MIR769-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 447.00 83.24 0.50 100.0 KRTAP19-1-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 128.00 34.22 0.14 100.0 MIR708-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 1693.00 90.15 1.89 100.0 MIR509-3-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 1.00 50.00 0.00 100.0 MIR543-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 473.00 94.98 0.53 100.0 MIR301B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 486.00 50.94 0.54 69.03 RNU1-82P-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 489.00 3.84 0.55 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3512.00 27.59 3.92 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1498.00 11.77 1.67 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2435.00 19.13 2.72 80.13 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 153.00 77.66 0.17 100.0 U3.17-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2632.00 50.27 2.94 100.0 SNORD17-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 2365.00 72.70 2.64 100.0 SNORD72-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 10145.00 80.54 11.33 100.0 SNORD70B-201 snoRNA hepatocyte (In vitro differentiated cells)