ENCFF000JKK

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 31779.00 89.28 1905.93 100.0 SNHG6-204 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 1.21 0.36 85.71 WDR74-204 protein coding mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 2976.00 58.78 178.48 73.86 HSPA8-211 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2039.00 84.40 122.29 100.0 RPS13-208 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 5761.00 86.04 345.51 100.0 HSPA8-215 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1.00 0.05 0.06 100.0 RPS2-215 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1964.00 73.75 117.79 100.0 RPL4-214 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2844.00 18.31 170.57 100.0 ENST00000570843 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 9186.00 59.13 550.93 100.0 ENST00000570843 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.07 0.11 95.15 C19orf48P-203 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.10 0.16 86.48 C19orf48P-203 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1756.00 68.78 105.32 100.0 C19orf48P-203 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 95.00 11.54 5.70 100.0 RPS11-206 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.19 0.06 100.0 ENST00000602478 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 928.00 43.32 55.66 100.0 NOP56-219 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.02 0.06 100.0 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 21.05 0.41 1.26 32.89 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2816.00 54.54 168.89 100.0 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 11.00 0.21 0.66 57.89 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 41.65 0.81 2.50 65.08 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 19.12 0.37 1.15 65.94 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 6.99 0.14 0.42 26.87 U2.3-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 95.00 7.53 5.70 100.0 SNHG14-224 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 1.00 0.08 0.06 100.0 SNHG14-224 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1500.00 0.34 89.96 100.0 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)