ENCFF000JKK

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 20.00 8.37 1.20 83.33 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 28.93 12.11 1.74 53.58 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 3.00 1.26 0.18 100.0 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 33.98 14.22 2.04 51.48 RNU5A-1-201 snRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 3.00 0.28 0.18 100.0 7SK.1-201 misc RNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 451.00 42.19 27.05 100.0 7SK.1-201 misc RNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 12.00 0.70 0.72 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 1.00 3.23 0.06 100.0 MT-TI-201 Mt tRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 3157.00 62.47 189.34 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 866.00 17.13 51.94 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 19045.00 93.22 1142.22 100.0 SNHG3-202 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3442.00 74.91 206.43 100.0 SNORD124-201 snoRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9.00 0.20 0.54 100.0 RPL3-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2509.00 56.37 150.48 66.39 RPL3-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 412.00 2.24 24.71 100.0 RPL13A-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14200.00 77.22 851.64 100.0 RPL13A-212 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 3361.00 21.81 201.57 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 10137.00 65.79 607.96 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2785.00 38.86 167.03 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1371.00 19.13 82.23 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 1.00 0.01 0.06 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 308854.00 98.65 18523.39 99.54 RPL5-205 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 36.00 0.01 2.16 100.0 RPL5-205 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 25.00 1.87 1.50 100.0 RACK1-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1594.00 4.48 95.60 100.0 SNHG6-204 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)