ENCFF853XSN

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR091JNF
Description: Part of ENCODE experiment ENCSR091JNF. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 311.00 3.77 0.94 100.0 RPL13A-212 retained intron Peyer's patch (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2.00 0.07 0.01 100.0 RPL7A-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 361.00 12.22 1.09 100.0 RPL7A-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 839.00 28.41 2.53 100.0 RPL7A-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 394.00 78.80 1.19 100.0 RGS11-208 retained intron Peyer's patch (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4230.00 76.27 12.78 93.92 NOP56-217 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 861.00 2.66 2.60 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 803.00 2.49 2.43 55.69 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2331.00 7.21 7.04 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2807.00 8.69 8.48 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 639.00 1.98 1.93 44.31 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 12620.00 39.06 38.13 92.6 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 829.00 14.89 2.50 100.0 GNL3-211 retained intron Peyer's patch (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3947.00 70.89 11.92 100.0 GNL3-211 retained intron Peyer's patch (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 148.00 26.96 0.45 100.0 RPL5-205 retained intron Peyer's patch (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 146.00 1.83 0.44 100.0 ZBED9-AS1-201 lncRNA Peyer's patch (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3212.00 89.72 9.70 100.0 RPS3A-206 retained intron Peyer's patch (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 18053.00 97.84 54.54 100.0 COX7C-203 protein coding Peyer's patch (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 12161.00 21.54 36.74 99.66 RACK1-229 protein coding Peyer's patch (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 11072.73 19.61 33.45 40.34 RACK1-229 protein coding Peyer's patch (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 25722.08 45.55 77.71 75.95 RACK1-229 protein coding Peyer's patch (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4175.00 7.39 12.61 100.0 RACK1-229 protein coding Peyer's patch (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 65.00 2.54 0.20 97.01 RACK1-230 retained intron Peyer's patch (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 2.00 0.08 0.01 22.22 RACK1-230 retained intron Peyer's patch (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 75.00 0.87 0.23 100.0 RNA5SP486-201 rRNA pseudogene Peyer's patch (Tissue)